Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Rta_117802-keto-4-pentenoate hydratase-like protein. (250 aa)    
Predicted Functional Partners:
Rta_11770
Candidate membrane protein, related to efflux protein.
       0.768
Rta_17120
4-oxalocrotonate decarboxylase-like protein.
  
     0.734
Rta_01760
Candidate 4-hydroxy-2-oxovalerate aldolase; Belongs to the HpcH/HpaI aldolase family.
 
  
 0.678
Rta_11760
Hypothetical protein.
       0.653
Rta_16750
Candidate terephthalate 1,2-dioxygenase oxygenase component large subunit.
 
   
 0.619
Rta_16740
Candidate terephthalate 1,2-dioxygenase oxygenase component small subunit.
 
   
 0.551
Rta_01780
5-carboxymethyl-2-hydroxymuconate delta-isomerase-like protein.
 
  
 0.542
Rta_11750
Candidate Co/Zn/Cd cation transporter.
       0.535
Rta_11790
long-chain-fatty-acid--CoA ligase-like protein.
       0.532
hpcB
Candidate 3,4-dihydroxyphenylacetate 2,3-dioxygenase.
 
  
 0.513
Your Current Organism:
Ramlibacter tataouinensis
NCBI taxonomy Id: 365046
Other names: Acidivorax sp. TTB310, Acidovorax sp. TTB310, R. tataouinensis TTB310, Ramlibacter tataouinensis TTB310, Ramlibacter tataouinensis str. TTB310, Ramlibacter tataouinensis strain TTB310
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