Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Rta_11820Conserved hypothetical protein. (171 aa)    
Predicted Functional Partners:
Rta_30410
Polyketide synthase-like protein.
  
 0.949
polA
Candidate DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family.
    
 0.714
Rta_10890
Candidate membrane protein.
  
     0.699
Rta_11830
Conserved hypothetical protein.
 
 
 0.680
Rta_30420
MelG protein (non-ribosomal peptide synthetase)-like protein.
  
 
 0.651
Rta_11840
Candidate membrane protein.
 
     0.627
Rta_11850
Disulfide oxidoreductase-like protein.
 
     0.577
Rta_03030
Conserved hypothetical protein.
  
     0.572
Rta_07730
Candidate zeaxanthin b-glucosyltransferase, Glycosyltransferase Family 1; Belongs to the UDP-glycosyltransferase family.
  
 
 0.567
Rta_28740
Candidate membrane protein.
  
     0.559
Your Current Organism:
Ramlibacter tataouinensis
NCBI taxonomy Id: 365046
Other names: Acidivorax sp. TTB310, Acidovorax sp. TTB310, R. tataouinensis TTB310, Ramlibacter tataouinensis TTB310, Ramlibacter tataouinensis str. TTB310, Ramlibacter tataouinensis strain TTB310
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