Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Rta_12030Protocatechuate 3,4-dioxygenase, beta subunit-like protein. (186 aa)    
Predicted Functional Partners:
pobA
Candidate P-hydroxybenzoate hydroxylase (4-hydroxybenzoate 3- monooxygenase).
 
  
 0.979
Rta_24760
Candidate protocatechuate 4,5-dioxygenase beta chain.
     
 0.907
Rta_24770
Candidate protocatechuate 4,5-dioxygenase alpha chain.
     
 0.907
Rta_16730
4-hydroxythreonine-4-phosphate dehydrogenase (4- (phosphohydroxy)-L-threonine dehydrogenase)-like protein; Belongs to the PdxA family.
     
  0.900
Rta_14780
4-carboxymuconolactone decarboxylase-like protein.
 
  
 0.648
Rta_12020
Benzil reductase ((S)-benzoin forming); Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases)-like protein; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
     
 0.558
Rta_24990
2-amino-3-carboxymuconate-6-semialdehyde decarboxylase-like protein.
  
     0.543
rluA
Uracil hydrolyase.
       0.534
Rta_01180
Conserved hypothetical protein.
  
     0.512
Rta_16720
Ferredoxin--NAD(+) reductase-like protein.
  
  
 0.489
Your Current Organism:
Ramlibacter tataouinensis
NCBI taxonomy Id: 365046
Other names: Acidivorax sp. TTB310, Acidovorax sp. TTB310, R. tataouinensis TTB310, Ramlibacter tataouinensis TTB310, Ramlibacter tataouinensis str. TTB310, Ramlibacter tataouinensis strain TTB310
Server load: low (30%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.