Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Rta_12550Hypothetical protein. (1433 aa)    
Predicted Functional Partners:
cobB
NAD-dependent protein deacetylase, SIR2 family-like protein; Belongs to the sirtuin family. Class III subfamily.
   
   0.795
hsdS
Candidate type I restriction- modification, DNA specificity subunit.
       0.756
hsdM
Candidate type I site-specific restriction-modification system, M subunit.
       0.754
hsdR
Candidate type I site-specific restriction-modification system, R subunit.
       0.577
Rta_27420
Conserved hypothetical protein.
  
     0.540
Rta_04110
Conserved hypothetical protein.
  
     0.465
Rta_12576
Conserved hypothetical protein.
 
     0.417
Your Current Organism:
Ramlibacter tataouinensis
NCBI taxonomy Id: 365046
Other names: Acidivorax sp. TTB310, Acidovorax sp. TTB310, R. tataouinensis TTB310, Ramlibacter tataouinensis TTB310, Ramlibacter tataouinensis str. TTB310, Ramlibacter tataouinensis strain TTB310
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