Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Rta_12690Conserved hypothetical protein. (270 aa)    
Predicted Functional Partners:
phoD
Candidate alkaline phosphatase D precursor.
 
     0.825
Rta_12700
Conserved hypothetical protein.
 
    0.816
Rta_12720
Transcriptional regulator, GntR family-like protein.
 
     0.796
Rta_12710
Conserved hypothetical protein.
       0.773
Rta_14190
Citrate lyase beta chain, citryl-CoA lyase subunit-like protein; Belongs to the HpcH/HpaI aldolase family.
   
  
 0.607
Rta_28050
(Citrate (pro-3S)-lyase beta chain) (Citryl-CoA lyase subunit); Belongs to the HpcH/HpaI aldolase family.
   
  
 0.607
Rta_12730
Conserved hypothetical protein.
       0.545
Rta_01500
Conserved hypothetical protein.
 
     0.439
Rta_21630
Gamma-butyrobetaine, 2-oxoglutarate dioxygenase (Gamma-butyrobetaine hydroxylase)-like protein.
 
     0.407
Your Current Organism:
Ramlibacter tataouinensis
NCBI taxonomy Id: 365046
Other names: Acidivorax sp. TTB310, Acidovorax sp. TTB310, R. tataouinensis TTB310, Ramlibacter tataouinensis TTB310, Ramlibacter tataouinensis str. TTB310, Ramlibacter tataouinensis strain TTB310
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