Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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Co-expression
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[Homology]
Score
Rta_12730Conserved hypothetical protein. (283 aa)    
Predicted Functional Partners:
Rta_30600
Formate dehydrogenase beta subunit; NADH:ubiquinone oxidoreductase subunit 2 or 24 kDa subunit and subunit 1 or 51 kDa subunit fusion, chain E and chain F fusion-like protein.
    
   0.848
ctaC
Candidate Cytochrome c oxidase polypeptide II precursor (Cytochrome aa3 subunit 2).
    
   0.742
Rta_30410
Polyketide synthase-like protein.
  
 
 0.641
Rta_12710
Conserved hypothetical protein.
 
     0.632
Rta_12700
Conserved hypothetical protein.
       0.548
Rta_12720
Transcriptional regulator, GntR family-like protein.
       0.548
Rta_12690
Conserved hypothetical protein.
       0.545
nuoG
Candidate NADH:ubiquinone oxidoreductase subunit 3 or 75 kDa subunit, chain G; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient. Belongs to the complex I 75 kDa subunit family.
    
 
 0.477
Rta_16140
Conserved hypothetical protein.
   
 
 0.473
Rta_26750
Isoflavone reductase (NADPH:isoflavone oxidoreductase)-like protein.
  
   0.472
Your Current Organism:
Ramlibacter tataouinensis
NCBI taxonomy Id: 365046
Other names: Acidivorax sp. TTB310, Acidovorax sp. TTB310, R. tataouinensis TTB310, Ramlibacter tataouinensis TTB310, Ramlibacter tataouinensis str. TTB310, Ramlibacter tataouinensis strain TTB310
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