Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Rta_12810Candidate membrane protein. (254 aa)    
Predicted Functional Partners:
thrB
Candidate homoserine kinase; Belongs to the pseudomonas-type ThrB family.
       0.818
Rta_23000
Conserved hypothetical protein.
 
    0.810
Rta_12830
Hypothetical protein.
       0.793
Rta_12800
Conserved hypothetical protein.
       0.773
Rta_37870
Conserved hypothetical protein.
  
     0.747
Rta_23460
Candidate membrane protein.
  
     0.742
Rta_24650
Candidate phasin (PHA granule-associated protein).
  
     0.733
Rta_05290
Protein-disulfide reductase (thioredoxin)-like protein.
  
     0.724
Rta_07330
Hypothetical protein.
  
     0.722
Rta_02850
Conserved hypothetical protein.
  
     0.718
Your Current Organism:
Ramlibacter tataouinensis
NCBI taxonomy Id: 365046
Other names: Acidivorax sp. TTB310, Acidovorax sp. TTB310, R. tataouinensis TTB310, Ramlibacter tataouinensis TTB310, Ramlibacter tataouinensis str. TTB310, Ramlibacter tataouinensis strain TTB310
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