Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Rta_12910Glycine-rich protein-like protein. (399 aa)    
Predicted Functional Partners:
Rta_12920
Conserved hypothetical protein.
 
     0.728
Rta_12930
Hypothetical protein.
       0.671
Rta_08520
Transcriptional regulator, LuxR family-like protein.
  
   
 0.636
Rta_37630
Conserved hypothetical protein.
  
     0.630
Rta_38110
Phosphoglycolate phosphatase-like protein.
  
     0.613
Rta_25370
DNA internalization-related competence protein-like protein.
  
  
 0.586
Rta_30410
Polyketide synthase-like protein.
     
 0.554
Rta_08500
Candidate response regulator, atypical CheY.
  
     0.552
Rta_13430
Candidate outer membrane protein precursorTonB-dependent.
    
 
 0.550
Rta_27740
Candidate ABC type bacteriocin/lantibiotic exporters, ATP-binding and permease domains.
  
  
 0.523
Your Current Organism:
Ramlibacter tataouinensis
NCBI taxonomy Id: 365046
Other names: Acidivorax sp. TTB310, Acidovorax sp. TTB310, R. tataouinensis TTB310, Ramlibacter tataouinensis TTB310, Ramlibacter tataouinensis str. TTB310, Ramlibacter tataouinensis strain TTB310
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