Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Rta_13070Dioxygenases-like protein. (381 aa)    
Predicted Functional Partners:
Rta_13060
Candidate transporter.
 
     0.782
Rta_06950
Ferredoxin--NAD(+) reductase-like protein.
  
  
 0.770
Rta_16740
Candidate terephthalate 1,2-dioxygenase oxygenase component small subunit.
  
 
 0.752
Rta_25980
Candidate salicylate-5-hydroxylase small oxygenase component.
  
 
 0.752
Rta_13050
3-mercaptopyruvate sulfurtransferase (Rhodanese- like protein)-like protein.
       0.742
xseB
Candidate exodeoxyribonuclease VII, small subunit; Bidirectionally degrades single-stranded DNA into large acid- insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides; Belongs to the XseB family.
 
     0.723
Rta_24650
Candidate phasin (PHA granule-associated protein).
  
     0.711
Rta_09890
Exoribonuclease R-like protein.
  
     0.701
Rta_14510
Candidate membrane protein.
  
     0.701
Rta_35650
Conserved hypothetical protein.
  
     0.664
Your Current Organism:
Ramlibacter tataouinensis
NCBI taxonomy Id: 365046
Other names: Acidivorax sp. TTB310, Acidovorax sp. TTB310, R. tataouinensis TTB310, Ramlibacter tataouinensis TTB310, Ramlibacter tataouinensis str. TTB310, Ramlibacter tataouinensis strain TTB310
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