Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Rta_13110TRAP-T mannitol/chloroaromatic compound transport system, periplasmic component-like protein; Part of the tripartite ATP-independent periplasmic (TRAP) transport system. (359 aa)    
Predicted Functional Partners:
fcbT3-2
Candidate large permease component.
 
  
 0.804
fcbT2-2
Candidate small permease component.
 
  
 0.801
fcbT2
Candidate small permease component.
 
  
 0.792
fcbT3
Candidate large permease component.
 
  
 0.787
fcbT3-3
Candidate large permease component.
 
  
 0.647
fcbT1-2
Candidate periplasmic component; Part of the tripartite ATP-independent periplasmic (TRAP) transport system.
 
  
 
0.600
fcbT1
Candidate periplasmic component; Part of the tripartite ATP-independent periplasmic (TRAP) transport system.
  
  
 
0.508
Rta_13090
Geranyltranstransferase (Farnesyl-diphosphate synthase)-like protein; (Farnesyl pyrophosphate synthetase) (Farnesyl diphosphate synthetase) (FPP synthetase); Belongs to the FPP/GGPP synthase family.
  
    0.440
xseB
Candidate exodeoxyribonuclease VII, small subunit; Bidirectionally degrades single-stranded DNA into large acid- insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides; Belongs to the XseB family.
       0.438
dxs
1-deoxy-D-xylulose-5-phosphate pyruvate-lyase (carboxylating); Catalyzes the acyloin condensation reaction between C atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D- xylulose-5-phosphate (DXP); Belongs to the transketolase family. DXPS subfamily.
       0.438
Your Current Organism:
Ramlibacter tataouinensis
NCBI taxonomy Id: 365046
Other names: Acidivorax sp. TTB310, Acidovorax sp. TTB310, R. tataouinensis TTB310, Ramlibacter tataouinensis TTB310, Ramlibacter tataouinensis str. TTB310, Ramlibacter tataouinensis strain TTB310
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