Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Rta_13240Candidate ABC transporter probably involved in tungstate transport, ATP-binding component; Belongs to the ABC transporter superfamily. (233 aa)    
Predicted Functional Partners:
Rta_13230
Candidate ABC transporter probably involved in tungstate transport, permease component.
  
  0.964
Rta_13250
Candidate ABC transporter probably involved in tungstate transport, periplasmic component.
 
 
  0.962
Rta_09390
Candidate ABC type amino acid transport system, permease component.
 
 0.773
Rta_09380
Candidate ABC type amino acid transport system, permease component.
 
 
 0.759
Rta_05180
Candidate ABC type amino acid transport system, permease component.
 
 
 0.741
Rta_05190
Candidate ABC type amino acid transport system, permease component.
 
 0.739
rpsE
Candidate 30S ribosomal protein S5; Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body. Belongs to the universal ribosomal protein uS5 family.
  
     0.646
Rta_13220
Transcriptional regulator, LysR family-like protein.
       0.604
ksgA
Ribosomal RNA small subunit methyltransferase A; Specifically dimethylates two adjacent adenosines (A1518 and A1519) in the loop of a conserved hairpin near the 3'-end of 16S rRNA in the 30S particle. May play a critical role in biogenesis of 30S subunits.
 
    0.572
rpsK
Candidate 30S ribosomal protein S11; Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine- Dalgarno cleft in the 70S ribosome; Belongs to the universal ribosomal protein uS11 family.
  
     0.569
Your Current Organism:
Ramlibacter tataouinensis
NCBI taxonomy Id: 365046
Other names: Acidivorax sp. TTB310, Acidovorax sp. TTB310, R. tataouinensis TTB310, Ramlibacter tataouinensis TTB310, Ramlibacter tataouinensis str. TTB310, Ramlibacter tataouinensis strain TTB310
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