Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
acrRCandidate transcriptional regulator AcrR (Potential acrAB operon repressor), TetR family. (203 aa)    
Predicted Functional Partners:
Rta_13500
Candidate periplasmic linker protein; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
     
 0.578
Rta_13520
Candidate fused inner/outer membrane transporter; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.
     
 0.570
dctP-5
Candidate periplasmic component.
       0.568
Rta_13470
Bifunctional protein : sensor, cNMP-binding domain-like protein.
     
 0.487
Rta_13530
Conserved hypothetical protein.
       0.442
Your Current Organism:
Ramlibacter tataouinensis
NCBI taxonomy Id: 365046
Other names: Acidivorax sp. TTB310, Acidovorax sp. TTB310, R. tataouinensis TTB310, Ramlibacter tataouinensis TTB310, Ramlibacter tataouinensis str. TTB310, Ramlibacter tataouinensis strain TTB310
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