Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Rta_13770Conserved hypothetical protein. (155 aa)    
Predicted Functional Partners:
Rta_13760
Cephalosporinase.
 
 
 
 0.863
Rta_13790
Cytochrome c-like protein.
 
     0.843
Rta_13750
Transcriptional regulator, ArsR family-like protein.
 
   
 0.828
Rta_13780
Nitrate reductase (NADH)-like protein.
 
 
   0.817
Rta_13820
Conserved hypothetical protein.
 
 
   0.815
Rta_13830
Conserved hypothetical protein.
 
 
 
 0.810
Rta_13800
Conserved hypothetical protein.
 
     0.809
Rta_13840
Candidate sulfur oxidation protein; Belongs to the 5'-nucleotidase family.
 
 
 
 0.786
Rta_13810
Conserved hypothetical protein.
 
     0.783
ctaC
Candidate Cytochrome c oxidase polypeptide II precursor (Cytochrome aa3 subunit 2).
   
 
 0.780
Your Current Organism:
Ramlibacter tataouinensis
NCBI taxonomy Id: 365046
Other names: Acidivorax sp. TTB310, Acidovorax sp. TTB310, R. tataouinensis TTB310, Ramlibacter tataouinensis TTB310, Ramlibacter tataouinensis str. TTB310, Ramlibacter tataouinensis strain TTB310
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