Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Rta_13840Candidate sulfur oxidation protein; Belongs to the 5'-nucleotidase family. (580 aa)    
Predicted Functional Partners:
Rta_13820
Conserved hypothetical protein.
 
  
 0.993
Rta_13810
Conserved hypothetical protein.
 
  
 0.991
Rta_13830
Conserved hypothetical protein.
 
  
 0.991
Rta_13800
Conserved hypothetical protein.
 
  
 0.990
Rta_13780
Nitrate reductase (NADH)-like protein.
 
  
 0.983
Rta_13790
Cytochrome c-like protein.
 
  
 0.982
Rta_19240
Sulfite oxidase-like protein.
 
  
 0.930
Rta_13050
3-mercaptopyruvate sulfurtransferase (Rhodanese- like protein)-like protein.
    
 0.916
cysD
ATP-sulfurylase small subunit.
     
 0.907
cysN
ATP-sulfurylase large subunit.
     
  0.900
Your Current Organism:
Ramlibacter tataouinensis
NCBI taxonomy Id: 365046
Other names: Acidivorax sp. TTB310, Acidovorax sp. TTB310, R. tataouinensis TTB310, Ramlibacter tataouinensis TTB310, Ramlibacter tataouinensis str. TTB310, Ramlibacter tataouinensis strain TTB310
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