STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rta_13860Candidate membrane protein. (371 aa)    
Predicted Functional Partners:
Rta_13820
Conserved hypothetical protein.
 
  
 0.815
Rta_13810
Conserved hypothetical protein.
 
   
 0.787
Rta_13800
Conserved hypothetical protein.
 
   
 0.781
Rta_13840
Candidate sulfur oxidation protein; Belongs to the 5'-nucleotidase family.
 
     0.776
Rta_13780
Nitrate reductase (NADH)-like protein.
 
   
 0.746
Rta_13790
Cytochrome c-like protein.
  
     0.741
Rta_13730
Candidate sulfide dehydrogenase [flavocytochrome c] flavoprotein chain precursor.
 
   
 0.734
Rta_13770
Conserved hypothetical protein.
 
     0.726
Rta_13830
Conserved hypothetical protein.
 
     0.726
Rta_31470
Conserved hypothetical protein; Belongs to the sulfur carrier protein TusA family.
 
  
 0.725
Your Current Organism:
Ramlibacter tataouinensis
NCBI taxonomy Id: 365046
Other names: Acidivorax sp. TTB310, Acidovorax sp. TTB310, R. tataouinensis TTB310, Ramlibacter tataouinensis TTB310, Ramlibacter tataouinensis str. TTB310, Ramlibacter tataouinensis strain TTB310
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.