Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Rta_13920Conserved hypothetical protein. (487 aa)    
Predicted Functional Partners:
Rta_13910
Conserved hypothetical protein.
 
 
 0.931
Rta_32440
Indolepyruvate ferredoxin oxidoreductase alpha subunit-like protein.
 
 
 0.845
dctM-10
Candidate small permease component.
  
     0.713
Rta_13900
Transcriptional regulator, MarR family-like protein.
 
    0.712
dctP-10
Candidate periplasmic component.
 
     0.701
Rta_18140
Oxidoreductases-like protein.
 
   
 0.639
Rta_35510
Candidate citrate utilization protein B.
  
 
 0.598
Rta_18000
Phthalate 4,5-dioxygenase (Phthalate dioxygenase)-like protein.
  
   
 0.481
Rta_35050
Candidate 2-aminobenzoate-CoA ligase.
 
  
 0.474
Rta_35040
Transcriptional regulator, MarR family-like protein.
  
    0.462
Your Current Organism:
Ramlibacter tataouinensis
NCBI taxonomy Id: 365046
Other names: Acidivorax sp. TTB310, Acidovorax sp. TTB310, R. tataouinensis TTB310, Ramlibacter tataouinensis TTB310, Ramlibacter tataouinensis str. TTB310, Ramlibacter tataouinensis strain TTB310
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