Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Rta_14200Conserved hypothetical protein. (288 aa)    
Predicted Functional Partners:
Rta_14210
acyl-CoA dehydrogenase-like protein.
 
    0.912
Rta_16620
Conserved hypothetical protein.
  
  
 
0.911
Rta_14190
Citrate lyase beta chain, citryl-CoA lyase subunit-like protein; Belongs to the HpcH/HpaI aldolase family.
 
  
 0.891
Rta_14180
Formyl-coenzyme A transferase (Formyl-CoA transferase)-like protein; Belongs to the CoA-transferase III family.
  
    0.690
Rta_16630
acyl-CoA dehydrogenase-like protein.
  
    0.671
Rta_14230
Conserved hypothetical protein.
 
  
 0.656
Rta_14140
Butyryl-CoA dehydrogenase (Short-chain-acyl-CoA dehydrogenase)-like protein; (Unsaturated acyl-CoA reductase) (Butyryl dehydrogenase).
 
    0.600
Rta_14220
Transcriptional regulator, IclR family-like protein.
 
    0.570
Rta_16650
Conserved hypothetical protein.
 
  
 0.476
tctC-22
Candidate extracytoplasmic binding receptor.
       0.473
Your Current Organism:
Ramlibacter tataouinensis
NCBI taxonomy Id: 365046
Other names: Acidivorax sp. TTB310, Acidovorax sp. TTB310, R. tataouinensis TTB310, Ramlibacter tataouinensis TTB310, Ramlibacter tataouinensis str. TTB310, Ramlibacter tataouinensis strain TTB310
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