Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
Rta_14410Conserved hypothetical protein. (271 aa)    
Predicted Functional Partners:
Rta_14390
GlcNAc deacetylase, Carbohydrate Esterase Family 4-like protein.
     
 0.802
Rta_14400
Candidate membrane protein.
       0.790
Rta_14380
Conserved hypothetical protein.
  
    0.752
Rta_02930
Conserved hypothetical protein.
  
     0.609
pgsA
Cardiolipin synthase (CMP-forming); (Glycerophosphate phosphatidyltransferase) (3-phosphatidyl-1-glycerol-3-phosphate synthase); Belongs to the CDP-alcohol phosphatidyltransferase class-I family.
  
  
 0.581
Rta_31260
Alkylglycerone-phosphate synthase (Alkyldihydroxyacetonephosphate synthase)-like protein.
 
     0.522
Rta_32060
Conserved hypothetical protein.
  
     0.477
glnA
Candidate glutamine synthetase (Glutamate--ammonia ligase).
       0.470
nadE
Candidate NAD(+) synthase (glutamine-hydrolyzing); Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source.
     
 0.470
Rta_33930
Conserved hypothetical protein.
  
     0.456
Your Current Organism:
Ramlibacter tataouinensis
NCBI taxonomy Id: 365046
Other names: Acidivorax sp. TTB310, Acidovorax sp. TTB310, R. tataouinensis TTB310, Ramlibacter tataouinensis TTB310, Ramlibacter tataouinensis str. TTB310, Ramlibacter tataouinensis strain TTB310
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