Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Rta_14740Candidate transporter. (278 aa)    
Predicted Functional Partners:
Rta_14750
Conserved hypothetical protein.
       0.649
Rta_11100
Hypothetical protein.
  
     0.631
Rta_14730
3-oxoacyl-[acyl-carrier-protein] reductase-like protein; Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases).
       0.574
Rta_24730
Hypothetical protein.
  
     0.514
Rta_01300
ATPase protein, AAA family-like protein.
  
     0.492
Rta_28470
Sigma-E factor negative regulatory protein-like protein.
  
     0.434
Rta_00410
Candidate membrane protein.
  
     0.432
Rta_20940
Conserved hypothetical protein; Essential cell division protein that stabilizes the FtsZ protofilaments by cross-linking them and that serves as a cytoplasmic membrane anchor for the Z ring. Also required for the recruitment to the septal ring of downstream cell division proteins. Belongs to the ZipA family.
  
     0.412
Rta_37830
Candidate membrane protein.
  
     0.410
Rta_14720
Electron transfer flavoprotein-ubiquinone oxidoreductase; Accepts electrons from ETF and reduces ubiquinone.
  
    0.407
Your Current Organism:
Ramlibacter tataouinensis
NCBI taxonomy Id: 365046
Other names: Acidivorax sp. TTB310, Acidovorax sp. TTB310, R. tataouinensis TTB310, Ramlibacter tataouinensis TTB310, Ramlibacter tataouinensis str. TTB310, Ramlibacter tataouinensis strain TTB310
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