Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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Co-occurrence
Co-expression
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[Homology]
Score
Rta_14920Conserved hypothetical protein; Hydrolyzes RNA 2',3'-cyclic phosphodiester to an RNA 2'- phosphomonoester; Belongs to the 2H phosphoesterase superfamily. ThpR family. (190 aa)    
Predicted Functional Partners:
Rta_14900
Conserved hypothetical protein.
     
 0.785
dnaE2
Candidate DNA polymerase III alpha subunit, DnaE subfamily; DNA polymerase involved in damage-induced mutagenesis and translesion synthesis (TLS). It is not the major replicative DNA polymerase.
     
 0.783
Rta_14890
Conserved hypothetical protein.
       0.780
Rta_23100
Conserved hypothetical protein.
  
     0.574
Rta_14880
Conserved hypothetical protein.
       0.550
Rta_00600
Candidate histidine kinase, classic.
  
     0.508
Rta_00410
Candidate membrane protein.
  
     0.497
dsbG
Candidate Thiol:disulfide interchange protein dsbG precursor.
 
     0.493
Rta_14860
Candidate 3-methyladenine DNA glycosylase; Belongs to the DNA glycosylase MPG family.
       0.459
Rta_14870
Candidate ABC type multidrug transport system, ATP-binding and permease components.
       0.459
Your Current Organism:
Ramlibacter tataouinensis
NCBI taxonomy Id: 365046
Other names: Acidivorax sp. TTB310, Acidovorax sp. TTB310, R. tataouinensis TTB310, Ramlibacter tataouinensis TTB310, Ramlibacter tataouinensis str. TTB310, Ramlibacter tataouinensis strain TTB310
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