Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Rta_15050Conserved hypothetical protein. (345 aa)    
Predicted Functional Partners:
Rta_15060
Transcriptional regulator, LysR family-like protein; Belongs to the LysR transcriptional regulatory family.
       0.587
trmB
Candidate tRNA (guanine-N(7)-)-methyltransferase; Catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA.
       0.575
Rta_37150
Deoxyribodipyrimidine photolyase-like protein.
 
     0.573
Rta_15040
glutamyl-tRNA synthetase (Glutamate--tRNA ligase)-like protein.
       0.544
Rta_15340
Hypothetical protein.
  
     0.463
Rta_08600
Conserved hypothetical protein.
  
     0.449
Rta_15070
Conserved hypothetical protein; Belongs to the pirin family.
       0.438
Your Current Organism:
Ramlibacter tataouinensis
NCBI taxonomy Id: 365046
Other names: Acidivorax sp. TTB310, Acidovorax sp. TTB310, R. tataouinensis TTB310, Ramlibacter tataouinensis TTB310, Ramlibacter tataouinensis str. TTB310, Ramlibacter tataouinensis strain TTB310
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