Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Rta_15070Conserved hypothetical protein; Belongs to the pirin family. (233 aa)    
Predicted Functional Partners:
Rta_15080
Candidate membrane protein.
  
  
 0.714
Rta_15100
Conserved hypothetical protein; Belongs to the pirin family.
 
   
0.608
Rta_15060
Transcriptional regulator, LysR family-like protein; Belongs to the LysR transcriptional regulatory family.
   
   0.605
Rta_15090
Flavoprotein WrbA (Trp repressor binding protein)-like protein.
       0.545
ligB
Candidate Aromatic ring-opening dioxygenase (Catalytic LigB subunit).
 
  
 0.540
Rta_16970
Conserved hypothetical protein.
 
  
 0.529
Rta_15110
Candidate membrane protein.
       0.450
Rta_15050
Conserved hypothetical protein.
       0.438
Your Current Organism:
Ramlibacter tataouinensis
NCBI taxonomy Id: 365046
Other names: Acidivorax sp. TTB310, Acidovorax sp. TTB310, R. tataouinensis TTB310, Ramlibacter tataouinensis TTB310, Ramlibacter tataouinensis str. TTB310, Ramlibacter tataouinensis strain TTB310
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