Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
Rta_15270Conserved hypothetical protein. (164 aa)    
Predicted Functional Partners:
Rta_15260
Type 4 fimbrial biogenesis protein PilW-like protein.
  
  
 0.807
Rta_15250
Type 4 fimbrial biogenesis protein-like protein.
     
 0.802
Rta_15240
Type 4 fimbrial biogenesis protein PilE-like protein.
     
 0.791
Rta_15280
Type 4 fimbrial biogenesis protein PilY1-like protein.
     
 0.701
Rta_15290
Type 4 fimbrial pilin-like protein.
  
  
 0.579
gspJ
Candidate pseudopilin, general secretion pathway protein J precursor (PilD-dependent protein), component of type II secretion system.
  
 
 0.574
Rta_25370
DNA internalization-related competence protein-like protein.
  
  
 0.569
ribD
Diaminohydroxyphosphoribosylaminopyrimidine deaminase; Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'- phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)-pyrimidinedione 5'- phosphate; In the C-terminal section; belongs to the HTP reductase family.
       0.553
gspK
Candidate pseudopilin, general secretion pathway protein K precursor (PilD-dependent protein), component of type II secretion system.
  
 
 0.525
gspF
Candidate general secretion pathway protein F.
  
  
 0.498
Your Current Organism:
Ramlibacter tataouinensis
NCBI taxonomy Id: 365046
Other names: Acidivorax sp. TTB310, Acidovorax sp. TTB310, R. tataouinensis TTB310, Ramlibacter tataouinensis TTB310, Ramlibacter tataouinensis str. TTB310, Ramlibacter tataouinensis strain TTB310
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