Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
Rta_15290Type 4 fimbrial pilin-like protein. (186 aa)    
Predicted Functional Partners:
Rta_15240
Type 4 fimbrial biogenesis protein PilE-like protein.
 
  
 0.896
Rta_15280
Type 4 fimbrial biogenesis protein PilY1-like protein.
 
  
 0.867
Rta_15260
Type 4 fimbrial biogenesis protein PilW-like protein.
 
  
 0.852
Rta_12340
Conserved hypothetical protein.
 
  
 0.818
Rta_15250
Type 4 fimbrial biogenesis protein-like protein.
 
  
 0.776
pilN
Candidate Tfp pilus assembly protein PilN.
 
  
 0.725
Rta_19820
Candidate type 4 fimbrial biogenesis protein PilZ.
  
   
 0.709
pilP
Candidate type IV pilus assembly protein PilP, putative lipoprotein of the pilotin family.
  
  
 0.698
pilO
Candidate Tfp pilus assembly protein PilO.
 
  
 0.665
pilM
Candidate type IV pilus assembly protein.
 
   
 0.647
Your Current Organism:
Ramlibacter tataouinensis
NCBI taxonomy Id: 365046
Other names: Acidivorax sp. TTB310, Acidovorax sp. TTB310, R. tataouinensis TTB310, Ramlibacter tataouinensis TTB310, Ramlibacter tataouinensis str. TTB310, Ramlibacter tataouinensis strain TTB310
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