Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Rta_15530Candidate histidine kinase, classic. (470 aa)    
Predicted Functional Partners:
Rta_15540
Candidate response regulator, OmpR.
 
 0.995
Rta_08940
Candidate histidine kinase, classic.
  
  
 
0.924
Rta_19460
Candidate histidine kinase, atypical hybrid.
  
 
 0.823
Rta_37470
Candidate response regulator, OmpR.
 
 
 0.806
Rta_08930
Candidate response regulator, OmpR.
 
 
 0.801
hslR
Candidate heat shock protein, HSP15 family.
       0.773
Rta_34840
Candidate response regulator, OmpR.
 
 
 0.772
Rta_28780
Candidate response regulator, OmpR.
 
 
 0.768
Rta_01950
Candidate response regulator, OmpR.
 
 
 0.766
Rta_34160
Candidate response regulator, CheY.
 
 
 0.758
Your Current Organism:
Ramlibacter tataouinensis
NCBI taxonomy Id: 365046
Other names: Acidivorax sp. TTB310, Acidovorax sp. TTB310, R. tataouinensis TTB310, Ramlibacter tataouinensis TTB310, Ramlibacter tataouinensis str. TTB310, Ramlibacter tataouinensis strain TTB310
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