Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
tctB-2Candidate small integral membrane protein. (167 aa)    
Predicted Functional Partners:
tctA-2
Candidate large integral membrane protein.
 
  
 0.963
tctB-3
Candidate small integral membrane protein.
  
  
  0.917
tctC-28
Candidate extracytoplasmic binding receptor.
 
    0.914
tctA
Candidate large integral membrane protein.
  
  
 0.808
tctA-3
Candidate large integral membrane protein.
  
  
 0.808
Rta_15530
Candidate histidine kinase, classic.
 
     0.743
Rta_35940
Membrane efflux protein-like protein.
  
     0.695
Rta_19690
Conserved hypothetical protein.
  
     0.669
Rta_03170
Candidate membrane protein.
  
     0.624
Rta_37830
Candidate membrane protein.
  
     0.619
Your Current Organism:
Ramlibacter tataouinensis
NCBI taxonomy Id: 365046
Other names: Acidivorax sp. TTB310, Acidovorax sp. TTB310, R. tataouinensis TTB310, Ramlibacter tataouinensis TTB310, Ramlibacter tataouinensis str. TTB310, Ramlibacter tataouinensis strain TTB310
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