Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
tctA-2Candidate large integral membrane protein. (503 aa)    
Predicted Functional Partners:
tctB-2
Candidate small integral membrane protein.
 
  
 0.963
tctC-28
Candidate extracytoplasmic binding receptor.
 
    0.960
tctA-3
Candidate large integral membrane protein.
  
  
 
0.907
tctA
Candidate large integral membrane protein.
  
  
 
0.905
tctC-27
Candidate extracytoplasmic binding receptor.
 
    0.847
tctC-50
Candidate extracytoplasmic binding receptor.
  
    0.829
Rta_34780
Protein bugT-like protein.
  
    0.829
tctC-43
Candidate extracytoplasmic binding receptor.
  
    0.827
tctC-52
Candidate extracytoplasmic binding receptor.
  
    0.825
tctC-20
Candidate extracytoplasmic binding receptor.
  
    0.823
Your Current Organism:
Ramlibacter tataouinensis
NCBI taxonomy Id: 365046
Other names: Acidivorax sp. TTB310, Acidovorax sp. TTB310, R. tataouinensis TTB310, Ramlibacter tataouinensis TTB310, Ramlibacter tataouinensis str. TTB310, Ramlibacter tataouinensis strain TTB310
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