Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Rta_15620Candidate ABC type branched chain amino acid transport systems, periplasmic component. (397 aa)    
Predicted Functional Partners:
Rta_15670
Candidate ABC type branched chain amino acid transport systems, permease component; Belongs to the binding-protein-dependent transport system permease family.
 
    0.924
Rta_15640
Candidate ABC type branched chain amino acid transport systems, ATP-binding component.
 
    0.920
Rta_15660
Candidate ABC type branched chain amino acid transport systems, permease component; Belongs to the binding-protein-dependent transport system permease family.
 
  
 0.915
livF
Candidate ABC type branched chain amino acid transport systems, ATP-binding component.
 
  
 0.901
Rta_20090
Candidate ABC type branched chain amino acid transport systems, permease component; Belongs to the binding-protein-dependent transport system permease family.
 
  
 0.711
Rta_20100
Candidate ABC type branched chain amino acid transport systems, permease component; Belongs to the binding-protein-dependent transport system permease family.
 
  
 0.673
Rta_20080
Candidate ABC type branched chain amino acid transport systems, ATP-binding component.
 
    0.611
Rta_20110
Candidate ABC type branched chain amino acid transport systems, periplasmic component.
  
     0.565
Rta_15610
Signal transduction protein : sensor, PAS domain; transcriptional regulator, Fis family-like protein.
       0.552
Rta_15680
D-(-)-3-hydroxybutyrate oligomer hydrolase-like protein.
       0.504
Your Current Organism:
Ramlibacter tataouinensis
NCBI taxonomy Id: 365046
Other names: Acidivorax sp. TTB310, Acidovorax sp. TTB310, R. tataouinensis TTB310, Ramlibacter tataouinensis TTB310, Ramlibacter tataouinensis str. TTB310, Ramlibacter tataouinensis strain TTB310
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