Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Rta_15740Phytoene synthase-like protein. (290 aa)    
Predicted Functional Partners:
Rta_15730
Phytoene synthase-like protein.
  
0.985
Rta_15720
Conserved hypothetical protein.
 
    0.877
Rta_03800
Carotene 7,8-desaturase (zeta-carotene desaturase)-like protein.
 
   
 0.810
Rta_07710
Candidate phytoene dehydrogenase (Phytoene desaturase).
 
  
 0.803
gapA
Candidate glyceraldehyde 3-phosphate dehydrogenase; Belongs to the glyceraldehyde-3-phosphate dehydrogenase family.
   
  
 0.679
Rta_15760
Candidate inner membrane transporter; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.
       0.601
Rta_15750
Candidate periplasmic linker protein; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
       0.595
tig
Candidate trigger factor; Involved in protein export. Acts as a chaperone by maintaining the newly synthesized protein in an open conformation. Functions as a peptidyl-prolyl cis-trans isomerase; Belongs to the FKBP-type PPIase family. Tig subfamily.
  
  
 0.553
Rta_25690
Conserved hypothetical protein.
    
 0.546
Rta_30410
Polyketide synthase-like protein.
   
 0.530
Your Current Organism:
Ramlibacter tataouinensis
NCBI taxonomy Id: 365046
Other names: Acidivorax sp. TTB310, Acidovorax sp. TTB310, R. tataouinensis TTB310, Ramlibacter tataouinensis TTB310, Ramlibacter tataouinensis str. TTB310, Ramlibacter tataouinensis strain TTB310
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