STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rta_15750Candidate periplasmic linker protein; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family. (379 aa)    
Predicted Functional Partners:
Rta_15760
Candidate inner membrane transporter; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.
 
 
 0.966
Rta_26120
Candidate ABC type transport system, involved in lipoprotein release, permease component with duplicated domains.
  
 
 0.750
Rta_35120
Candidate inner membrane transporter.
 
 
 0.700
Rta_13520
Candidate fused inner/outer membrane transporter; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.
 
 
 0.694
Rta_23190
Candidate inner membrane transporter; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.
 
 
 0.684
Rta_37120
Candidate inner membrane transporter; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.
 
 
 0.668
Rta_16520
Candidate inner membrane transporter; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.
 
 
 0.647
Rta_16510
Candidate inner membrane transporter; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.
 
 
 0.639
Rta_30050
Hypothetical protein.
 
 
 0.611
Rta_15740
Phytoene synthase-like protein.
       0.595
Your Current Organism:
Ramlibacter tataouinensis
NCBI taxonomy Id: 365046
Other names: Acidivorax sp. TTB310, Acidovorax sp. TTB310, R. tataouinensis TTB310, Ramlibacter tataouinensis TTB310, Ramlibacter tataouinensis str. TTB310, Ramlibacter tataouinensis strain TTB310
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.