Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
Experiments
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[Homology]
Score
Rta_15870Candidate ABC type Fe3+ transport system, permease component with duplicated domains. (572 aa)    
Predicted Functional Partners:
Rta_15860
Candidate ABC type Fe3+ transport system, periplasmic component.
 
 
 0.995
afuC
Candidate ABC transporter, ATP-binding component probably involved in an Fe3+ transport system; Belongs to the ABC transporter superfamily.
 
 0.991
Rta_24660
Candidate ABC type Fe3+ transport system.
 
 
 0.968
Rta_34050
Candidate ABC transporter, ATP-binding component probably involved in an Fe3+ transport system; Belongs to the ABC transporter superfamily.
 
 0.957
Rta_34040
Candidate ABC type Fe3+ transport system, permease component with duplicated domains.
  
  
 
0.924
Rta_15890
Conserved hypothetical protein.
 
     0.663
Rta_15900
4-phospho-D-threonate 3-dehydrogenase / 4-phospho-D-erythronate 3-dehydrogenase; 4-hydroxythreonine-4-phosphate dehydrogenase (4- (phosphohydroxy)-L-threonine dehydrogenase)-like protein; Belongs to the PdxA family.
       0.617
Rta_15910
3-isopropylmalate dehydrogenase (Beta-IPM dehydrogenase)-like protein.
       0.617
fumC
Candidate fumarate hydratase class II (Fumarase C); Involved in the TCA cycle. Catalyzes the stereospecific interconversion of fumarate to L-malate; Belongs to the class-II fumarase/aspartase family. Fumarase subfamily.
 
     0.553
Rta_29980
Candidate ABC type sugar transport system, ATP-binding component; Belongs to the ABC transporter superfamily.
 
   
 0.419
Your Current Organism:
Ramlibacter tataouinensis
NCBI taxonomy Id: 365046
Other names: Acidivorax sp. TTB310, Acidovorax sp. TTB310, R. tataouinensis TTB310, Ramlibacter tataouinensis TTB310, Ramlibacter tataouinensis str. TTB310, Ramlibacter tataouinensis strain TTB310
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