Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
afuCCandidate ABC transporter, ATP-binding component probably involved in an Fe3+ transport system; Belongs to the ABC transporter superfamily. (354 aa)    
Predicted Functional Partners:
Rta_15870
Candidate ABC type Fe3+ transport system, permease component with duplicated domains.
 
 0.991
Rta_15860
Candidate ABC type Fe3+ transport system, periplasmic component.
 
 
 0.967
Rta_34040
Candidate ABC type Fe3+ transport system, permease component with duplicated domains.
 
 0.931
Rta_34050
Candidate ABC transporter, ATP-binding component probably involved in an Fe3+ transport system; Belongs to the ABC transporter superfamily.
  
  
 
0.916
Rta_24660
Candidate ABC type Fe3+ transport system.
 
 
 0.879
Rta_15910
3-isopropylmalate dehydrogenase (Beta-IPM dehydrogenase)-like protein.
     
 0.638
Rta_15890
Conserved hypothetical protein.
       0.634
Rta_15900
4-phospho-D-threonate 3-dehydrogenase / 4-phospho-D-erythronate 3-dehydrogenase; 4-hydroxythreonine-4-phosphate dehydrogenase (4- (phosphohydroxy)-L-threonine dehydrogenase)-like protein; Belongs to the PdxA family.
       0.634
Rta_20500
Candidate ABC type sulfate transport systems, permease component; Part of the ABC transporter complex (TC 3.A.1.6.1) involved in sulfate/thiosulfate import; Belongs to the binding-protein-dependent transport system permease family. CysTW subfamily.
   
 0.516
Rta_25370
DNA internalization-related competence protein-like protein.
     
 0.502
Your Current Organism:
Ramlibacter tataouinensis
NCBI taxonomy Id: 365046
Other names: Acidivorax sp. TTB310, Acidovorax sp. TTB310, R. tataouinensis TTB310, Ramlibacter tataouinensis TTB310, Ramlibacter tataouinensis str. TTB310, Ramlibacter tataouinensis strain TTB310
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