Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
Rta_16060Conserved hypothetical protein. (315 aa)    
Predicted Functional Partners:
Rta_16030
CDP-tyvelose-2-epimerase (CDP-paratose 2-epimerase)-like protein.
     0.978
Rta_16040
UDP-galactose 4-epimerase.
     0.882
Rta_16000
A-glycosyltransferase, Glycosyltransferase Family 4-like protein.
 
    0.865
Rta_15990
A-glycosyltransferase, Glycosyltransferase Family 4-like protein.
 
     0.863
Rta_15960
TRNA (mo5U34)-methyltransferase; 3-demethylubiquinone-9 3-methyltransferase (3,4-dihydroxy-5-hexaprenylbenzoate methyltransferase)-like protein.
 
     0.847
Rta_15970
Conserved hypothetical protein.
 
     0.847
Rta_15980
Conserved hypothetical protein.
 
     0.847
Rta_16065
Conserved hypothetical protein.
 
     0.843
Rta_16020
Oxidoreductases-like protein.
 
     0.840
Rta_16050
Conserved hypothetical protein.
 
     0.837
Your Current Organism:
Ramlibacter tataouinensis
NCBI taxonomy Id: 365046
Other names: Acidivorax sp. TTB310, Acidovorax sp. TTB310, R. tataouinensis TTB310, Ramlibacter tataouinensis TTB310, Ramlibacter tataouinensis str. TTB310, Ramlibacter tataouinensis strain TTB310
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