Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
Rta_16170Transcriptional regulator, GntR family-like protein. (222 aa)    
Predicted Functional Partners:
Rta_16180
malonyl-CoA decarboxylase (Malonyl-CoA carboxy-lyase)-like protein.
  
    0.790
Rta_11500
Transcriptional regulator, GntR family-like protein.
  
  
 0.694
tctC-29
Candidate extracytoplasmic binding receptor.
       0.658
Rta_16200
long-chain-fatty-acid--CoA ligase (Long-chain acyl-CoA synthetase)-like protein.
       0.658
lgt
Candidate prolipoprotein diacylglyceryl transferase, membrane protein; Catalyzes the transfer of the diacylglyceryl group from phosphatidylglycerol to the sulfhydryl group of the N-terminal cysteine of a prolipoprotein, the first step in the formation of mature lipoproteins; Belongs to the Lgt family.
       0.500
Rta_16210
Conserved hypothetical protein.
       0.460
Your Current Organism:
Ramlibacter tataouinensis
NCBI taxonomy Id: 365046
Other names: Acidivorax sp. TTB310, Acidovorax sp. TTB310, R. tataouinensis TTB310, Ramlibacter tataouinensis TTB310, Ramlibacter tataouinensis str. TTB310, Ramlibacter tataouinensis strain TTB310
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