tctC-29 protein (Ramlibacter tataouinensis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

tctC-29

Candidate extracytoplasmic binding receptor. (332 aa)

Predicted Functional Partners:

tctA-3

0.780

tctA

0.775

Rta_16200

0.773

Rta_16180

0.707

tctB-3

0.705

tctB

0.688

Rta_16170

0.658

tctA-2

0.650

Rta_16210

0.532

lgt

0.434

Your Current Organism:

Ramlibacter tataouinensis

NCBI taxonomy Id: 365046
Other names: Acidivorax sp. TTB310, Acidovorax sp. TTB310, R. tataouinensis TTB310, Ramlibacter tataouinensis TTB310, Ramlibacter tataouinensis str. TTB310, Ramlibacter tataouinensis strain TTB310

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Rta_16170	Rta_16180	Rta_16170	Rta_16180	Transcriptional regulator, GntR family-like protein.	malonyl-CoA decarboxylase (Malonyl-CoA carboxy-lyase)-like protein.	0.790
Rta_16170	Rta_16200	Rta_16170	Rta_16200	Transcriptional regulator, GntR family-like protein.	long-chain-fatty-acid--CoA ligase (Long-chain acyl-CoA synthetase)-like protein.	0.658
Rta_16170	Rta_16210	Rta_16170	Rta_16210	Transcriptional regulator, GntR family-like protein.	Conserved hypothetical protein.	0.460
Rta_16170	lgt	Rta_16170	Rta_16160	Transcriptional regulator, GntR family-like protein.	Candidate prolipoprotein diacylglyceryl transferase, membrane protein; Catalyzes the transfer of the diacylglyceryl group from phosphatidylglycerol to the sulfhydryl group of the N-terminal cysteine of a prolipoprotein, the first step in the formation of mature lipoproteins; Belongs to the Lgt family.	0.500
Rta_16170	tctC-29	Rta_16170	Rta_16190	Transcriptional regulator, GntR family-like protein.	Candidate extracytoplasmic binding receptor.	0.658
Rta_16180	Rta_16170	Rta_16180	Rta_16170	malonyl-CoA decarboxylase (Malonyl-CoA carboxy-lyase)-like protein.	Transcriptional regulator, GntR family-like protein.	0.790
Rta_16180	Rta_16200	Rta_16180	Rta_16200	malonyl-CoA decarboxylase (Malonyl-CoA carboxy-lyase)-like protein.	long-chain-fatty-acid--CoA ligase (Long-chain acyl-CoA synthetase)-like protein.	0.758
Rta_16180	Rta_16210	Rta_16180	Rta_16210	malonyl-CoA decarboxylase (Malonyl-CoA carboxy-lyase)-like protein.	Conserved hypothetical protein.	0.460
Rta_16180	lgt	Rta_16180	Rta_16160	malonyl-CoA decarboxylase (Malonyl-CoA carboxy-lyase)-like protein.	Candidate prolipoprotein diacylglyceryl transferase, membrane protein; Catalyzes the transfer of the diacylglyceryl group from phosphatidylglycerol to the sulfhydryl group of the N-terminal cysteine of a prolipoprotein, the first step in the formation of mature lipoproteins; Belongs to the Lgt family.	0.605
Rta_16180	tctC-29	Rta_16180	Rta_16190	malonyl-CoA decarboxylase (Malonyl-CoA carboxy-lyase)-like protein.	Candidate extracytoplasmic binding receptor.	0.707
Rta_16200	Rta_16170	Rta_16200	Rta_16170	long-chain-fatty-acid--CoA ligase (Long-chain acyl-CoA synthetase)-like protein.	Transcriptional regulator, GntR family-like protein.	0.658
Rta_16200	Rta_16180	Rta_16200	Rta_16180	long-chain-fatty-acid--CoA ligase (Long-chain acyl-CoA synthetase)-like protein.	malonyl-CoA decarboxylase (Malonyl-CoA carboxy-lyase)-like protein.	0.758
Rta_16200	Rta_16210	Rta_16200	Rta_16210	long-chain-fatty-acid--CoA ligase (Long-chain acyl-CoA synthetase)-like protein.	Conserved hypothetical protein.	0.532
Rta_16200	lgt	Rta_16200	Rta_16160	long-chain-fatty-acid--CoA ligase (Long-chain acyl-CoA synthetase)-like protein.	Candidate prolipoprotein diacylglyceryl transferase, membrane protein; Catalyzes the transfer of the diacylglyceryl group from phosphatidylglycerol to the sulfhydryl group of the N-terminal cysteine of a prolipoprotein, the first step in the formation of mature lipoproteins; Belongs to the Lgt family.	0.434
Rta_16200	tctC-29	Rta_16200	Rta_16190	long-chain-fatty-acid--CoA ligase (Long-chain acyl-CoA synthetase)-like protein.	Candidate extracytoplasmic binding receptor.	0.773
Rta_16210	Rta_16170	Rta_16210	Rta_16170	Conserved hypothetical protein.	Transcriptional regulator, GntR family-like protein.	0.460
Rta_16210	Rta_16180	Rta_16210	Rta_16180	Conserved hypothetical protein.	malonyl-CoA decarboxylase (Malonyl-CoA carboxy-lyase)-like protein.	0.460
Rta_16210	Rta_16200	Rta_16210	Rta_16200	Conserved hypothetical protein.	long-chain-fatty-acid--CoA ligase (Long-chain acyl-CoA synthetase)-like protein.	0.532
Rta_16210	tctC-29	Rta_16210	Rta_16190	Conserved hypothetical protein.	Candidate extracytoplasmic binding receptor.	0.532
lgt	Rta_16170	Rta_16160	Rta_16170	Candidate prolipoprotein diacylglyceryl transferase, membrane protein; Catalyzes the transfer of the diacylglyceryl group from phosphatidylglycerol to the sulfhydryl group of the N-terminal cysteine of a prolipoprotein, the first step in the formation of mature lipoproteins; Belongs to the Lgt family.	Transcriptional regulator, GntR family-like protein.	0.500

page 1 of 3

Server load: low (24%) [HD]

Permalink

Network

Neighborhood

Databases

Co-occurrence

Textmining

Co-expression

Experiments

Fusion

© STRING Consortium 2026

Credits

Access

Info

About