Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Rta_16240Oxidoreductases-like protein. (1030 aa)    
Predicted Functional Partners:
Rta_16260
Candidate serine--glyoxylate aminotransferase (Serine--glyoxylate transaminase).
 
  
 0.834
Rta_16250
Transcriptional regulator, GntR family-like protein.
 
     0.808
Rta_30600
Formate dehydrogenase beta subunit; NADH:ubiquinone oxidoreductase subunit 2 or 24 kDa subunit and subunit 1 or 51 kDa subunit fusion, chain E and chain F fusion-like protein.
  
 0.735
Rta_25180
Candidate electron transfer flavoprotein alpha-subunit (Electron transfer flavoprotein large subunit).
  
 
 0.725
Rta_25190
Candidate electron transfer flavoprotein beta-subunit (Electron transfer flavoprotein small subunit).
  
 
 0.725
ctaC-2
Candidate cytochrome c oxidase polypeptide II precursor (Cytochrome aa3 subunit 2); Subunits I and II form the functional core of the enzyme complex. Electrons originating in cytochrome c are transferred via heme a and Cu(A) to the binuclear center formed by heme a3 and Cu(B).
  
 
 0.653
Rta_16230
Acetyltransferases-like protein.
       0.634
Rta_16290
Unsaturated acyl-CoA hydratase; Belongs to the enoyl-CoA hydratase/isomerase family.
 
 
 0.565
Rta_37850
Bifunctional protein : malic enzyme; phosphate acetyltransferase (phosphotransacetylase)-like protein; Belongs to the malic enzymes family.
  
  
 0.561
gltB
Candidate Ferredoxin-dependent glutamate synthase.
     
 0.553
Your Current Organism:
Ramlibacter tataouinensis
NCBI taxonomy Id: 365046
Other names: Acidivorax sp. TTB310, Acidovorax sp. TTB310, R. tataouinensis TTB310, Ramlibacter tataouinensis TTB310, Ramlibacter tataouinensis str. TTB310, Ramlibacter tataouinensis strain TTB310
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