Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
Rta_16250Transcriptional regulator, GntR family-like protein. (231 aa)    
Predicted Functional Partners:
Rta_16240
Oxidoreductases-like protein.
 
     0.808
Rta_11500
Transcriptional regulator, GntR family-like protein.
  
  
 0.720
Rta_19090
Transcriptional regulator, GntR family-like protein.
  
  
 0.707
Rta_16230
Acetyltransferases-like protein.
       0.634
Rta_16260
Candidate serine--glyoxylate aminotransferase (Serine--glyoxylate transaminase).
 
     0.585
Rta_16290
Unsaturated acyl-CoA hydratase; Belongs to the enoyl-CoA hydratase/isomerase family.
  
    0.435
tctC-30
Candidate extracytoplasmic binding receptor.
       0.431
Rta_16280
Formyl-coenzyme A transferase (Formyl-CoA transferase)-like protein; Belongs to the CoA-transferase III family.
       0.431
Rta_16220
Hypothetical protein.
     
 0.415
Your Current Organism:
Ramlibacter tataouinensis
NCBI taxonomy Id: 365046
Other names: Acidivorax sp. TTB310, Acidovorax sp. TTB310, R. tataouinensis TTB310, Ramlibacter tataouinensis TTB310, Ramlibacter tataouinensis str. TTB310, Ramlibacter tataouinensis strain TTB310
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