Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Rta_16310Hypothetical protein. (242 aa)    
Predicted Functional Partners:
Rta_30410
Polyketide synthase-like protein.
 
 0.719
Rta_16300
Hypothetical protein.
   
   0.593
Rta_16290
Unsaturated acyl-CoA hydratase; Belongs to the enoyl-CoA hydratase/isomerase family.
   
  0.522
Rta_16280
Formyl-coenzyme A transferase (Formyl-CoA transferase)-like protein; Belongs to the CoA-transferase III family.
    
  0.478
Rta_16260
Candidate serine--glyoxylate aminotransferase (Serine--glyoxylate transaminase).
    
 0.468
Rta_04820
Conserved hypothetical protein.
 
 
 
 0.455
tctC-30
Candidate extracytoplasmic binding receptor.
       0.416
Your Current Organism:
Ramlibacter tataouinensis
NCBI taxonomy Id: 365046
Other names: Acidivorax sp. TTB310, Acidovorax sp. TTB310, R. tataouinensis TTB310, Ramlibacter tataouinensis TTB310, Ramlibacter tataouinensis str. TTB310, Ramlibacter tataouinensis strain TTB310
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