Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Rta_167304-hydroxythreonine-4-phosphate dehydrogenase (4- (phosphohydroxy)-L-threonine dehydrogenase)-like protein; Belongs to the PdxA family. (312 aa)    
Predicted Functional Partners:
Rta_16740
Candidate terephthalate 1,2-dioxygenase oxygenase component small subunit.
    
  0.976
Rta_16750
Candidate terephthalate 1,2-dioxygenase oxygenase component large subunit.
    
  0.976
Rta_16720
Ferredoxin--NAD(+) reductase-like protein.
    
  0.975
Rta_12030
Protocatechuate 3,4-dioxygenase, beta subunit-like protein.
     
  0.900
Rta_24760
Candidate protocatechuate 4,5-dioxygenase beta chain.
     
  0.900
Rta_24770
Candidate protocatechuate 4,5-dioxygenase alpha chain.
     
  0.900
pdxJ
Candidate pyridoxal phosphate biosynthetic protein; Catalyzes the complicated ring closure reaction between the two acyclic compounds 1-deoxy-D-xylulose-5-phosphate (DXP) and 3-amino- 2-oxopropyl phosphate (1-amino-acetone-3-phosphate or AAP) to form pyridoxine 5'-phosphate (PNP) and inorganic phosphate.
 
 
 0.833
tctC-35
Candidate extracytoplasmic binding receptor.
       0.701
Rta_16710
Acetohydroxy-acid synthase small subunit; Belongs to the TPP enzyme family.
       0.569
serC
Candidate phosphoserine aminotransferase; Catalyzes the reversible conversion of 3- phosphohydroxypyruvate to phosphoserine and of 3-hydroxy-2-oxo-4- phosphonooxybutanoate to phosphohydroxythreonine; Belongs to the class-V pyridoxal-phosphate-dependent aminotransferase family. SerC subfamily.
     
 0.551
Your Current Organism:
Ramlibacter tataouinensis
NCBI taxonomy Id: 365046
Other names: Acidivorax sp. TTB310, Acidovorax sp. TTB310, R. tataouinensis TTB310, Ramlibacter tataouinensis TTB310, Ramlibacter tataouinensis str. TTB310, Ramlibacter tataouinensis strain TTB310
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