Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Rta_16750Candidate terephthalate 1,2-dioxygenase oxygenase component large subunit. (409 aa)    
Predicted Functional Partners:
Rta_16740
Candidate terephthalate 1,2-dioxygenase oxygenase component small subunit.
 
 0.999
Rta_16720
Ferredoxin--NAD(+) reductase-like protein.
 
 
 0.988
Rta_25980
Candidate salicylate-5-hydroxylase small oxygenase component.
 
 
 0.979
Rta_16730
4-hydroxythreonine-4-phosphate dehydrogenase (4- (phosphohydroxy)-L-threonine dehydrogenase)-like protein; Belongs to the PdxA family.
    
  0.976
tctC-35
Candidate extracytoplasmic binding receptor.
       0.701
Rta_17930
Gentisate 1,2-dioxygenase-like protein.
 
   
 0.626
Rta_11780
2-keto-4-pentenoate hydratase-like protein.
 
   
 0.619
Rta_16770
Transcriptional regulator, IclR family-like protein.
 
   
 0.586
Rta_31550
Ferredoxin--NAD(+) reductase-like protein.
 
  
 0.568
Rta_17980
Ferrodoxin-like protein.
 
  
 0.566
Your Current Organism:
Ramlibacter tataouinensis
NCBI taxonomy Id: 365046
Other names: Acidivorax sp. TTB310, Acidovorax sp. TTB310, R. tataouinensis TTB310, Ramlibacter tataouinensis TTB310, Ramlibacter tataouinensis str. TTB310, Ramlibacter tataouinensis strain TTB310
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