Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Rta_16790Hypothetical protein. (451 aa)    
Predicted Functional Partners:
Rta_34870
Pili assembly chaperone protein-like protein.
 
 0.993
Rta_07660
Hypothetical protein.
  
 0.971
Rta_34880
Outer membrane usher protein-like protein.
  
  
 
0.929
Rta_08520
Transcriptional regulator, LuxR family-like protein.
  
    0.563
Rta_30820
Conserved hypothetical protein.
  
     0.549
Rta_16780
Candidate membrane protein.
       0.519
Rta_16800
Aminotransferases-like protein.
       0.492
Rta_00410
Candidate membrane protein.
  
     0.413
Rta_10630
Conserved hypothetical protein.
  
     0.406
Your Current Organism:
Ramlibacter tataouinensis
NCBI taxonomy Id: 365046
Other names: Acidivorax sp. TTB310, Acidovorax sp. TTB310, R. tataouinensis TTB310, Ramlibacter tataouinensis TTB310, Ramlibacter tataouinensis str. TTB310, Ramlibacter tataouinensis strain TTB310
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