Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
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[Homology]
Score
Rta_16910Candidate b-glycosyltransferase, Glycosyltransferase Family 2. (323 aa)    
Predicted Functional Partners:
Rta_10770
Candidate sugar-1-phosphate transferase, membrane protein.
 
  
 0.601
Rta_28290
Candidate sugar-1-phosphate transferase, membrane protein.
 
  
 0.576
Rta_28310
A-glycosyltransferase, Glycosyltransferase Family 4-like protein.
 
  
 0.566
galE-2
UDP- galactose 4-epimerase; Belongs to the NAD(P)-dependent epimerase/dehydratase family.
 
   
 0.530
galE
UDP-galactose 4-epimerase; Belongs to the NAD(P)-dependent epimerase/dehydratase family.
 
   
 0.504
Rta_10790
Polysaccharide export protein-like protein.
 
  
 0.499
Rta_10810
Conserved hypothetical protein.
 
  
 0.479
Rta_10900
Candidate succinoglycan transport protein.
 
  
 0.467
Rta_10850
A-glycosyltransferase, Glycosyltransferase Family 4-like protein.
 
  
 0.442
Rta_28280
A-glycosyltransferase, Glycosyltransferase Family 4-like protein.
 
  
 0.417
Your Current Organism:
Ramlibacter tataouinensis
NCBI taxonomy Id: 365046
Other names: Acidivorax sp. TTB310, Acidovorax sp. TTB310, R. tataouinensis TTB310, Ramlibacter tataouinensis TTB310, Ramlibacter tataouinensis str. TTB310, Ramlibacter tataouinensis strain TTB310
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