Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Rta_17160Candidate membrane protein. (86 aa)    
Predicted Functional Partners:
Rta_17170
Candidate membrane protein.
 
     0.954
Rta_17150
Hypothetical protein.
       0.804
Rta_07150
Conserved hypothetical protein.
  
     0.633
Rta_12360
Candidate histidine kinase, atypical hybrid.
 
     0.585
Rta_19460
Candidate histidine kinase, atypical hybrid.
 
     0.559
Rta_17140
Hypothetical protein.
       0.532
Rta_20670
Conserved hypothetical protein.
  
     0.532
Rta_00330
Hypothetical protein.
  
     0.530
Rta_07160
Conserved hypothetical protein.
  
     0.479
Rta_20880
Hypothetical protein.
  
     0.435
Your Current Organism:
Ramlibacter tataouinensis
NCBI taxonomy Id: 365046
Other names: Acidivorax sp. TTB310, Acidovorax sp. TTB310, R. tataouinensis TTB310, Ramlibacter tataouinensis TTB310, Ramlibacter tataouinensis str. TTB310, Ramlibacter tataouinensis strain TTB310
Server load: low (28%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.