Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Rta_17190Candidate ABC type branched chain amino acid transport systems, periplasmic component. (373 aa)    
Predicted Functional Partners:
pssA
Candidate Phosphatidylserine synthase (CDP-diacylglycerol--serine O-phosphatidyltransferase); Belongs to the CDP-alcohol phosphatidyltransferase class-I family.
       0.578
phoD
Candidate alkaline phosphatase D precursor.
     
 0.530
Rta_30180
Transcriptional regulator, Fur family-like protein; Belongs to the Fur family.
  
     0.502
Rta_31600
Candidate ABC type branched chain amino acid transport systems, permease component; Belongs to the binding-protein-dependent transport system permease family.
 
  
 0.496
Rta_34960
Candidate ABC type branched chain amino acid transport systems, permease component; Belongs to the binding-protein-dependent transport system permease family.
 
  
 0.495
Rta_26180
Chitinase, Glycoside Hydrolase Family 18-like protein.
  
     0.493
Rta_35850
Conserved hypothetical protein.
  
     0.491
Rta_08500
Candidate response regulator, atypical CheY.
  
     0.432
Rta_07610
Candidate ABC type branched chain amino acid transport system, permease component; Belongs to the binding-protein-dependent transport system permease family.
  
  
 0.428
Rta_12250
Candidate ABC type branched chain amino acid transport systems, permease component; Belongs to the binding-protein-dependent transport system permease family.
  
  
 0.428
Your Current Organism:
Ramlibacter tataouinensis
NCBI taxonomy Id: 365046
Other names: Acidivorax sp. TTB310, Acidovorax sp. TTB310, R. tataouinensis TTB310, Ramlibacter tataouinensis TTB310, Ramlibacter tataouinensis str. TTB310, Ramlibacter tataouinensis strain TTB310
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