Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
phoDCandidate alkaline phosphatase D precursor. (530 aa)    
Predicted Functional Partners:
Rta_31070
GTP cyclohydrolase I-like protein.
    
 0.917
Rta_07240
Dihydroneopterin aldolase-like protein.
     
 0.912
nudB
Candidate dATP pyrophosphohydrolase.
     
  0.900
Rta_12690
Conserved hypothetical protein.
 
     0.825
pstB
Candidate ABC type phosphate transport system, ATP-binding component; Part of the ABC transporter complex PstSACB involved in phosphate import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Phosphate importer (TC 3.A.1.7) family.
   
  
 0.734
Rta_01350
Hypothetical protein.
 
  
 0.696
phoU
Candidate phosphate transport system protein PhoU; Plays a role in the regulation of phosphate uptake.
   
  
 0.679
ppk
ATP- polyphosphate phosphotransferase; Catalyzes the reversible transfer of the terminal phosphate of ATP to form a long-chain polyphosphate (polyP). Belongs to the polyphosphate kinase 1 (PPK1) family.
      
 0.669
Rta_37630
Conserved hypothetical protein.
  
   
 0.666
cynT
Candidate carbonate dehydratase (Carbonic anhydrase); Reversible hydration of carbon dioxide. Belongs to the beta-class carbonic anhydrase family.
      
 0.624
Your Current Organism:
Ramlibacter tataouinensis
NCBI taxonomy Id: 365046
Other names: Acidivorax sp. TTB310, Acidovorax sp. TTB310, R. tataouinensis TTB310, Ramlibacter tataouinensis TTB310, Ramlibacter tataouinensis str. TTB310, Ramlibacter tataouinensis strain TTB310
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