Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
Rta_17650Oxidoreductases-like protein. (262 aa)    
Predicted Functional Partners:
Rta_17660
Candidate Ribose/xylose/arabinose/galactoside ABC type transport systems, permease component.
       0.773
Rta_17670
Candidate Ribose/xylose/arabinose/galactoside ABC type transport systems, permease component.
       0.773
pstS
Candidate Ribose/xylose/arabinose/galactoside ABC type transport systems, ATP-binding component with duplicated domains.
       0.773
Rta_17220
3-oxoacyl-[acyl-carrier protein] reductase; Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases)-like protein.
  
     0.714
Rta_11480
2-oxo-3-deoxygalactonate kinase.
  
     0.597
Rta_17690
Candidate Ribose/xylose/arabinose/galactoside ABC type transport systems, periplasmic component.
       0.543
Rta_14320
Oxidoreductases-like protein; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
  
     0.530
Rta_30410
Polyketide synthase-like protein.
  
 
 0.425
Rta_17700
Transcriptional regulator, LacI family-like protein.
   
 
 0.405
Rta_00300
Dehydrogenase/reductase oxidoreductase protein-like protein.
  
 
   0.403
Your Current Organism:
Ramlibacter tataouinensis
NCBI taxonomy Id: 365046
Other names: Acidivorax sp. TTB310, Acidovorax sp. TTB310, R. tataouinensis TTB310, Ramlibacter tataouinensis TTB310, Ramlibacter tataouinensis str. TTB310, Ramlibacter tataouinensis strain TTB310
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