Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
Rta_17700Transcriptional regulator, LacI family-like protein. (341 aa)    
Predicted Functional Partners:
gltB
Candidate Ferredoxin-dependent glutamate synthase.
    
 
 0.882
Rta_03450
Candidate PTS system, HPr-like protein.
 
 
 
 0.828
Rta_17690
Candidate Ribose/xylose/arabinose/galactoside ABC type transport systems, periplasmic component.
 
  
 0.804
Rta_30410
Polyketide synthase-like protein.
    
 
 0.703
Rta_17670
Candidate Ribose/xylose/arabinose/galactoside ABC type transport systems, permease component.
 
  
 0.699
Rta_17660
Candidate Ribose/xylose/arabinose/galactoside ABC type transport systems, permease component.
 
  
 0.690
Rta_13720
Fructokinase-like protein.
 
  
 0.643
pstS
Candidate Ribose/xylose/arabinose/galactoside ABC type transport systems, ATP-binding component with duplicated domains.
 
  
 0.626
Rta_17720
Conserved hypothetical protein.
 
   
 0.626
Rta_06220
Candidate b-glucosidase, Glycoside Hydrolase Family 3.
 
   
 0.583
Your Current Organism:
Ramlibacter tataouinensis
NCBI taxonomy Id: 365046
Other names: Acidivorax sp. TTB310, Acidovorax sp. TTB310, R. tataouinensis TTB310, Ramlibacter tataouinensis TTB310, Ramlibacter tataouinensis str. TTB310, Ramlibacter tataouinensis strain TTB310
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