Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
Rta_17710Conserved hypothetical protein. (282 aa)    
Predicted Functional Partners:
Rta_17730
Gluconolactonase precursor-like protein.
 
    0.782
Rta_17760
Conserved hypothetical protein.
 
     0.741
Rta_17720
Conserved hypothetical protein.
       0.737
folP
Dihydropteroate pyrophosphorylase; Catalyzes the condensation of para-aminobenzoate (pABA) with 6-hydroxymethyl-7,8-dihydropterin diphosphate (DHPt-PP) to form 7,8- dihydropteroate (H2Pte), the immediate precursor of folate derivatives.
       0.697
glmM
Candidate phosphoglucosamine mutase; Catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate; Belongs to the phosphohexose mutase family.
       0.697
Rta_16810
B-xylosidase/arabinofuranosidase, Glycoside Hydrolase Family 43-like protein; Belongs to the glycosyl hydrolase 43 family.
 
     0.628
Rta_03060
Candidate b-glycosidase, Glycoside Hydrolase Family 1; Belongs to the glycosyl hydrolase 1 family.
  
     0.617
Rta_05020
Candidate b-glycosidase, Glycoside Hydrolase Family 2; Belongs to the glycosyl hydrolase 2 family.
  
    0.585
Rta_30410
Polyketide synthase-like protein.
 
 
 0.573
Rta_17700
Transcriptional regulator, LacI family-like protein.
       0.525
Your Current Organism:
Ramlibacter tataouinensis
NCBI taxonomy Id: 365046
Other names: Acidivorax sp. TTB310, Acidovorax sp. TTB310, R. tataouinensis TTB310, Ramlibacter tataouinensis TTB310, Ramlibacter tataouinensis str. TTB310, Ramlibacter tataouinensis strain TTB310
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