Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
Rta_17720Conserved hypothetical protein. (309 aa)    
Predicted Functional Partners:
galK
Candidate galactokinase (Galactose kinase); Belongs to the GHMP kinase family. GalK subfamily.
  
 0.981
Rta_07340
N-acetylmannosamine kinase(ManNAc kinase)-like protein.
    
 0.914
Rta_17730
Gluconolactonase precursor-like protein.
 
  
 0.850
glmM
Candidate phosphoglucosamine mutase; Catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate; Belongs to the phosphohexose mutase family.
     
 0.759
Rta_17710
Conserved hypothetical protein.
       0.737
folP
Dihydropteroate pyrophosphorylase; Catalyzes the condensation of para-aminobenzoate (pABA) with 6-hydroxymethyl-7,8-dihydropterin diphosphate (DHPt-PP) to form 7,8- dihydropteroate (H2Pte), the immediate precursor of folate derivatives.
       0.737
Rta_17760
Conserved hypothetical protein.
       0.732
Rta_17700
Transcriptional regulator, LacI family-like protein.
 
   
 0.626
Rta_05030
Gal-1-P uridylyltransferase; Belongs to the galactose-1-phosphate uridylyltransferase type 1 family.
  
 
 0.619
Rta_36700
Penicillin-binding protein 4 precursor (D-alanyl-D-alanine carboxypeptidase)-like protein.
  
  
 0.536
Your Current Organism:
Ramlibacter tataouinensis
NCBI taxonomy Id: 365046
Other names: Acidivorax sp. TTB310, Acidovorax sp. TTB310, R. tataouinensis TTB310, Ramlibacter tataouinensis TTB310, Ramlibacter tataouinensis str. TTB310, Ramlibacter tataouinensis strain TTB310
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