Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
Rta_17930Gentisate 1,2-dioxygenase-like protein. (353 aa)    
Predicted Functional Partners:
Rta_17950
Salicylate hydroxylase (Salicylate 1-monooxygenase)-like protein.
 
   
 0.885
Rta_17920
Conserved hypothetical protein.
     
 0.829
Rta_17940
Conserved hypothetical protein.
     
 0.710
Rta_25990
Candidate salicylate-5-hydroxylase large oxygenase component.
 
   
 0.666
Rta_16750
Candidate terephthalate 1,2-dioxygenase oxygenase component large subunit.
 
   
 0.626
Rta_25980
Candidate salicylate-5-hydroxylase small oxygenase component.
 
   
 0.606
Rta_16740
Candidate terephthalate 1,2-dioxygenase oxygenase component small subunit.
 
   
 0.603
Rta_17960
Transcriptional regulator, MarR family-like protein.
       0.518
Rta_27950
Salicylate hydroxylase (Salicylate 1-monooxygenase)-like protein.
 
   
 0.518
dctM-7
Candidate small permease component.
       0.500
Your Current Organism:
Ramlibacter tataouinensis
NCBI taxonomy Id: 365046
Other names: Acidivorax sp. TTB310, Acidovorax sp. TTB310, R. tataouinensis TTB310, Ramlibacter tataouinensis TTB310, Ramlibacter tataouinensis str. TTB310, Ramlibacter tataouinensis strain TTB310
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